PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U31143.10
Common NameJCGZ_25924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 461aa    MW: 51216.5 Da    PI: 6.6007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U31143.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06252272526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+++++ G C++Gd C ++Hg
  Jcr4U31143.10 252 PCPDHRK-GVCRHGDFCEYSHG 272
                    8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127962.6E-954127IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.61858152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0185888IPR002110Ankyrin repeat
CDDcd002044.98E-1358148No hitNo description
Gene3DG3DSA:1.25.40.201.3E-1558140IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-1559151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008693125IPR002110Ankyrin repeat
PROSITE profilePS5008811.08793128IPR002110Ankyrin repeat
SMARTSM003560.015247273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.967252274IPR000571Zinc finger, CCCH-type
SMARTSM0035616282305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNTSVGTVET EYSFSMLLEC AADNDVEGFK RSVFDESEVR QVGLWYVHHR VSKKGVLEHR  60
TPLMVAAKYG SADVMKLILS LPEVDVNFSC GSDNSSALHC AASGGSSNAI DVIKLLLLAG  120
ADPSSTDANG HRPVDIIVAY PNFPNLKIAL EKLLKNIGSL CQWELQFSTS SLNSSSPPIS  180
WTSEEGKKDC VDPSFPDTKD DAYANDKFWM FSFKIQPCSR AYFHDWTECP FAHPGENARR  240
RDLRRFHYSC VPCPDHRKGV CRHGDFCEYS HGIFESWLHP AQYRTRLCRD GSSCSRRVCF  300
FAHTNEQLRP VSASTGAAVP SLQAPARDFT AAFNLFSGAL PAVSAVPPFP FTPPMSPSGN  360
DLNLLMAWPQ QNISNLEISG NNLQASRLRT TSNAREIPSE ELNTIQYFEL LQQHLLNDLS  420
YISQPHRNSS TNLSACFKQL NPSNPDRLWS AEVSSPKAHI D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090004.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV41e-162C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A067JH090.0A0A067JH09_JATCU; Uncharacterized protein
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-157CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]